G4DiffusionControlledReactionModel Class Reference

#include <G4DiffusionControlledReactionModel.hh>

Inheritance diagram for G4DiffusionControlledReactionModel:

Public Member Functions
G4bool	FindReaction (const G4Track &, const G4Track &, G4double, G4double &, G4bool) override
	G4DiffusionControlledReactionModel ()
	G4DiffusionControlledReactionModel (const G4DiffusionControlledReactionModel &)=delete
G4double	GetReactionRadius (const G4MolecularConfiguration *, const G4MolecularConfiguration *) override
G4double	GetReactionRadius (G4int) override
const G4DNAMolecularReactionTable *	GetReactionTable ()
void	Initialise (const G4MolecularConfiguration *, const G4Track &) override
void	InitialiseToPrint (const G4MolecularConfiguration *) override
G4DiffusionControlledReactionModel &	operator= (const G4DiffusionControlledReactionModel &)=delete
void	SetReactionTable (const G4DNAMolecularReactionTable *)
void	SetReactionTypeManager (G4VReactionTypeManager *typeManager)
	~G4DiffusionControlledReactionModel () override

Protected Attributes
const G4DNAMolecularReactionTable *	fpReactionTable

Private Attributes
const std::vector< const G4DNAMolecularReactionData * > *	fpReactionData
G4DNAReactionTypeManager *	fReactionTypeManager

Detailed Description

Definition at line 37 of file G4DiffusionControlledReactionModel.hh.

Constructor & Destructor Documentation

G4DiffusionControlledReactionModel() [1/2]

G4DiffusionControlledReactionModel::G4DiffusionControlledReactionModel

(

)

Definition at line 37 of file G4DiffusionControlledReactionModel.cc.

    : G4VDNAReactionModel()
    , fpReactionData(nullptr)
    , fReactionTypeManager(nullptr)
{
}

~G4DiffusionControlledReactionModel()

G4DiffusionControlledReactionModel::~G4DiffusionControlledReactionModel ( )

overridedefault

G4DiffusionControlledReactionModel() [2/2]

G4DiffusionControlledReactionModel::G4DiffusionControlledReactionModel ( const G4DiffusionControlledReactionModel &  )

delete

Member Function Documentation

FindReaction()

G4bool G4DiffusionControlledReactionModel::FindReaction ( const G4Track &  , const G4Track &  , G4double  , G4double &  , G4bool    )

inlineoverridevirtual

Implements G4VDNAReactionModel.

Definition at line 52 of file G4DiffusionControlledReactionModel.hh.

                                {return true;}

GetReactionRadius() [1/2]

G4double G4DiffusionControlledReactionModel::GetReactionRadius ( const G4MolecularConfiguration *  pMol1, const G4MolecularConfiguration *  pMol2  )

overridevirtual

Implements G4VDNAReactionModel.

Definition at line 57 of file G4DiffusionControlledReactionModel.cc.

{
    auto reactionData = fpReactionTable->GetReactionData(pMol1, pMol2);
    if(reactionData == nullptr)
    {
        G4ExceptionDescription exceptionDescription;
        exceptionDescription << "No reactionData"
                             <<" for : "<<pMol1->GetName()
                             <<" and "<<pMol2->GetName();
        G4Exception("G4DiffusionControlledReactionModel"
                    "::GetReactionRadius()", "G4DiffusionControlledReactionModel00",
                    FatalException, exceptionDescription);
    }
    G4double kobs = reactionData->GetObservedReactionRateConstant();
    G4double D;
    if(pMol1 == pMol2)
    {    
        D = (pMol1->GetDiffusionCoefficient());
    }
    else
    {
        D = (pMol1->GetDiffusionCoefficient() +
             pMol2->GetDiffusionCoefficient());//
    }
    
    if ( D == 0 )
    {
        G4ExceptionDescription exceptionDescription;
        exceptionDescription << "D = "<< D
        << " is uncorrected"
        <<" for : "<<pMol1->GetName()
        <<" and "<<pMol2->GetName();
        G4Exception("G4DiffusionControlledReactionModel"
                    "::GetReactionRadius()", "G4DiffusionControlledReactionModel01",
                    FatalException, exceptionDescription);
    }
 
    G4double Reff = kobs / ( 4 * CLHEP::pi * D * Avogadro );
    return Reff;
}

References source.hepunit::Avogadro, D(), FatalException, G4VDNAReactionModel::fpReactionTable, G4Exception(), G4MolecularConfiguration::GetDiffusionCoefficient(), G4MolecularConfiguration::GetName(), G4DNAMolecularReactionTable::GetReactionData(), and CLHEP::pi.

Referenced by GetReactionRadius().

GetReactionRadius() [2/2]

G4double G4DiffusionControlledReactionModel::GetReactionRadius ( G4int  i )

overridevirtual

Implements G4VDNAReactionModel.

Definition at line 99 of file G4DiffusionControlledReactionModel.cc.

{
    auto pMol1 = (*fpReactionData)[i]->GetReactant1();
    auto pMol2 = (*fpReactionData)[i]->GetReactant2();
    return GetReactionRadius(pMol1,pMol2);
}

References GetReactionRadius().

GetReactionTable()

const G4DNAMolecularReactionTable * G4VDNAReactionModel::GetReactionTable ( )

inherited

Definition at line 41 of file G4VDNAReactionModel.cc.

{
    return fpReactionTable;
}

References G4VDNAReactionModel::fpReactionTable.

Referenced by G4DNAMolecularReactionTable::PrintTable().

Initialise()

void G4DiffusionControlledReactionModel::Initialise ( const G4MolecularConfiguration *  pMolecule, const G4Track &    )

overridevirtual

Reimplemented from G4VDNAReactionModel.

Definition at line 46 of file G4DiffusionControlledReactionModel.cc.

{
    fpReactionData = fpReactionTable->GetReactionData(pMolecule);
}

References fpReactionData, G4VDNAReactionModel::fpReactionTable, and G4DNAMolecularReactionTable::GetReactionData().

InitialiseToPrint()

void G4DiffusionControlledReactionModel::InitialiseToPrint ( const G4MolecularConfiguration *  pMolecule )

overridevirtual

Implements G4VDNAReactionModel.

Definition at line 52 of file G4DiffusionControlledReactionModel.cc.

{
    fpReactionData = fpReactionTable->GetReactionData(pMolecule);
}

References fpReactionData, G4VDNAReactionModel::fpReactionTable, and G4DNAMolecularReactionTable::GetReactionData().

operator=()

G4DiffusionControlledReactionModel & G4DiffusionControlledReactionModel::operator= ( const G4DiffusionControlledReactionModel &  )

delete

SetReactionTable()

void G4VDNAReactionModel::SetReactionTable ( const G4DNAMolecularReactionTable *  pReactionTable )

inherited

Definition at line 36 of file G4VDNAReactionModel.cc.

{
    fpReactionTable = pReactionTable;
}

References G4VDNAReactionModel::fpReactionTable.

Referenced by G4DNAMolecularReactionTable::PrintTable().

SetReactionTypeManager()

void G4DiffusionControlledReactionModel::SetReactionTypeManager

(

G4VReactionTypeManager *

typeManager

)

Definition at line 106 of file G4DiffusionControlledReactionModel.cc.

{
    fReactionTypeManager = ((G4DNAReactionTypeManager*)typeManager);
}

References fReactionTypeManager.

Field Documentation

fpReactionData

const std::vector<const G4DNAMolecularReactionData*>* G4DiffusionControlledReactionModel::fpReactionData

private

Definition at line 62 of file G4DiffusionControlledReactionModel.hh.

Referenced by Initialise(), and InitialiseToPrint().

fpReactionTable

const G4DNAMolecularReactionTable* G4VDNAReactionModel::fpReactionTable

protectedinherited

Definition at line 82 of file G4VDNAReactionModel.hh.

Referenced by G4DNASmoluchowskiReactionModel::GetReactionRadius(), GetReactionRadius(), G4VDNAReactionModel::GetReactionTable(), G4DNASmoluchowskiReactionModel::Initialise(), Initialise(), G4DNASmoluchowskiReactionModel::InitialiseToPrint(), InitialiseToPrint(), and G4VDNAReactionModel::SetReactionTable().

fReactionTypeManager

G4DNAReactionTypeManager* G4DiffusionControlledReactionModel::fReactionTypeManager

private

Definition at line 63 of file G4DiffusionControlledReactionModel.hh.

Referenced by SetReactionTypeManager().

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The documentation for this class was generated from the following files:

• source/processes/electromagnetic/dna/models/include/G4DiffusionControlledReactionModel.hh
• source/processes/electromagnetic/dna/models/src/G4DiffusionControlledReactionModel.cc