G4AugerData.cc

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//
// 
//
// Author: Alfonso Mantero (Alfonso.Mantero@ge.infn.it)
//
// History:
// -----------
// Based on G4FluoData by Elena Guardincerri
// 
// Modified: 30.07.02 VI Add select active Z + clean up against pedantic compiler
//
// -------------------------------------------------------------------
 
#include <fstream>
#include <sstream>
 
#include "G4AugerData.hh"
#include "G4SystemOfUnits.hh"
#include "G4DataVector.hh"
#include "G4Material.hh"
#include "G4Element.hh"
#include "G4ElementVector.hh"
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4AugerData::G4AugerData()
{
  G4int n = 0;
  numberOfVacancies.resize(100,n);
 
  BuildAugerTransitionTable(); 
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4AugerData::~G4AugerData()
{;}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
size_t G4AugerData::NumberOfVacancies(G4int Z) const
{
  return numberOfVacancies[Z];
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4int G4AugerData::VacancyId(G4int Z, G4int vacancyIndex) const
{
  G4int n = 0;
  if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z])
    {
      G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0;
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    n = (G4int) dataSet[vacancyIndex].FinalShellId();
  }  
  return n;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
// Attention: this method wants the vacancy index, not the Id
size_t G4AugerData::NumberOfTransitions(G4int Z, G4int vacancyIndex) const
{
  G4int n = 0;
  if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z])
    {
      G4Exception("G4AugerData::VacancyId()","de0002", JustWarning, "Energy deposited locally");
      return 0;
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) 
      {
    G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
    return 0;
      }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    n = (G4int)dataSet[vacancyIndex].TransitionOriginatingShellIds()->size();
  }
 return  n;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
size_t G4AugerData::NumberOfAuger(G4int Z, G4int initIndex, G4int vacancyId) const
{
  size_t n = 0;
  if (initIndex<0 || initIndex>=numberOfVacancies[Z])
    {
      G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
      return 0;
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0;
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    const std::vector<G4int>* temp =  dataSet[initIndex].AugerOriginatingShellIds(vacancyId);
    n = temp->size();
  }
  return n;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
size_t G4AugerData::AugerShellId(G4int Z, G4int vacancyIndex, G4int transId, G4int augerIndex) const
{
  size_t n = 0;  
  if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z])
    {
      G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
      return 0;
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0;
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    n = dataSet[vacancyIndex].AugerOriginatingShellId(augerIndex,transId);
  }
  return n;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4int G4AugerData::StartShellId(G4int Z, G4int vacancyIndex, G4int transitionShellIndex) const
{
  G4int n = 0; 
 
   if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z]) 
     {
       G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
       return 0;
     }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0; 
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    n = dataSet[vacancyIndex].TransitionOriginatingShellId(transitionShellIndex);
  } 
 return n;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4double G4AugerData::StartShellEnergy(G4int Z, G4int vacancyIndex, G4int transitionId, G4int augerIndex) const
{
  G4double energy = 0;
  
  if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z])
    {
      G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
      return 0;
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0;
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    energy = dataSet[vacancyIndex].AugerTransitionEnergy(augerIndex,transitionId);
      
  }
  return energy;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4double G4AugerData::StartShellProb(G4int Z, G4int vacancyIndex,G4int transitionId,G4int augerIndex) const
{
  G4double prob = 0;
    
  if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z]) 
    {
      G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
      return 0;
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0;
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    prob = dataSet[vacancyIndex].AugerTransitionProbability(augerIndex, transitionId);
  }
  return prob;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
std::vector<G4AugerTransition> G4AugerData::LoadData(G4int Z)
{ 
  // Build the complete string identifying the file with the data set
  std::ostringstream ost;
  if(Z != 0){
    ost << "au-tr-pr-"<< Z << ".dat";
  }
  else{
    ost << "au-tr-pr-"<<".dat"; 
  }
  G4String name(ost.str());
  
  char* path = std::getenv("G4LEDATA");
  if (!path)
    { 
      G4String excep = "G4AugerData::LoadData";
      G4Exception(excep,"em0006", FatalException,"" );
      std::vector<G4AugerTransition> a;
      return a;
    }
  
  G4String pathString(path);
  G4String dirFile = pathString + "/auger/" + name;
  std::ifstream file(dirFile);
  std::filebuf* lsdp = file.rdbuf();
  
  if (! (lsdp->is_open()) )
    {
      G4String excep = "G4AugerData::LoadData";
      G4String msg = "Missing" + dirFile;
      G4Exception(excep,"em0003", FatalException, msg);
    }
 
  G4double a = 0;
  G4int k = 1;
  G4int sLocal = 0;
  
  G4int vacId = 0;
  std::vector<G4int>* initIds = new std::vector<G4int>;
  std::vector<G4int>* newIds = new std::vector<G4int>;
  G4DataVector* transEnergies = new G4DataVector;
  G4DataVector* transProbabilities = new G4DataVector;
  std::vector<G4AugerTransition> augerTransitionVector;
  std::map<G4int,std::vector<G4int>,std::less<G4int> >* newIdMap = 
    new std::map<G4int,std::vector<G4int>,std::less<G4int> >;
  std::map<G4int,G4DataVector,std::less<G4int> >* newEnergyMap =
    new std::map<G4int,G4DataVector,std::less<G4int> >;
  std::map<G4int,G4DataVector,std::less<G4int> >* newProbabilityMap = 
    new std::map<G4int,G4DataVector,std::less<G4int> >;
  
  do {
    file >> a;
    G4int nColumns = 4;
    if (a == -1)
      {
    if (sLocal == 0)
      {
        // End of a shell data set
        std::vector<G4int>::iterator vectorIndex = initIds->begin();
        
        vacId = *vectorIndex;
        std::vector<G4int> identifiers;
        for (vectorIndex = initIds->begin()+1 ; vectorIndex != initIds->end(); ++vectorIndex){
        identifiers.push_back(*vectorIndex);
        }
        vectorIndex = (initIds->end())-1;
        G4int augerShellId = *(vectorIndex);
                
        (*newIdMap)[augerShellId] = *newIds;
        (*newEnergyMap)[augerShellId] = *transEnergies;
        (*newProbabilityMap)[augerShellId] = *transProbabilities;
        
        augerTransitionVector.push_back(G4AugerTransition(vacId, identifiers, 
                                  newIdMap, newEnergyMap, newProbabilityMap));
        // Now deleting all the variables I used, and creating new ones for the next shell
        delete newIdMap;
        delete newEnergyMap;
        delete newProbabilityMap;
        
        G4int n = initIds->size();      
        nInitShells.push_back(n);
        numberOfVacancies[Z]++;
        delete initIds;
        delete newIds;
        delete transEnergies;       
        delete transProbabilities;
        initIds = new std::vector<G4int>;
        newIds = new std::vector<G4int>;
        transEnergies = new G4DataVector;
        transProbabilities = new G4DataVector;
        newIdMap = new std::map<G4int,std::vector<G4int>,std::less<G4int> >;
        newEnergyMap = new std::map<G4int,G4DataVector,std::less<G4int> >;
        newProbabilityMap = new std::map<G4int,G4DataVector,std::less<G4int> >; 
      }      
    sLocal++;
    if (sLocal == nColumns)
      {
        sLocal = 0;
      }
      }
    else
      {
    
    if (k%nColumns == 3){
      // 3rd column is the transition probabilities
      transProbabilities->push_back(a);   
      k++;
    }
    else if(k%nColumns == 2){    
      // 2nd column is new auger vacancy      
      G4int l = (G4int)a;
      newIds->push_back(l);
      k++;
    }
    else if (k%nColumns == 1)
      {
        // 1st column is shell id
        if(initIds->size() == 0) {
          // if this is the first data of the shell, all the colums are equal 
        // to the shell Id; so we skip the next colums ang go to the next row
          initIds->push_back((G4int)a);
          // first line of initIds is the original shell of the vacancy
          file >> a;
          file >> a;
          file >> a;
          k = k+3;
        }
        else {        
          if((G4int)a != initIds->back()){
        if((initIds->size()) == 1) { 
          initIds->push_back((G4int)a);
        }  
        else {
          
          
          G4int augerShellId = 0;
          augerShellId = initIds->back();
          
          (*newIdMap)[augerShellId] = *newIds;
          (*newEnergyMap)[augerShellId] = *transEnergies;
          (*newProbabilityMap)[augerShellId] = *transProbabilities;
          delete newIds;
          delete transEnergies;
          delete transProbabilities;
          newIds = new std::vector<G4int>;
          transEnergies = new G4DataVector;
          transProbabilities = new G4DataVector;
          initIds->push_back((G4int)a);
        }
          }
        }
        k++;    
      }
    else if (k%nColumns == 0)
      {//fourth column is transition energies
        G4double e = a * MeV; 
        transEnergies->push_back(e);
        k=1;
      }
      }
  }
  while (a != -2); // end of file
  file.close();
  delete initIds;
  delete newIds;
  delete transEnergies;
  delete transProbabilities;
  delete newIdMap ;
  delete newEnergyMap;
  delete newProbabilityMap;
  return augerTransitionVector; 
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
void G4AugerData::BuildAugerTransitionTable()
{
  for (G4int element = 6; element < 100; ++element)
    {     
      augerTransitionTable.insert(trans_Table::value_type(element,LoadData(element)));
    }
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
void G4AugerData::PrintData(G4int Z) 
{
  for (G4int i = 0; i < numberOfVacancies[Z]; ++i)
    {
      G4cout << "---- TransitionData for the vacancy nb "
         <<i
         <<" of the atomic number elemnt " 
         << Z
         <<"----- "
         <<G4endl;
      
      for (size_t k = 0; k<=NumberOfTransitions(Z,i); k++)
    { 
      G4int id = StartShellId(Z,i,k);
      
      for (size_t a = 0; a <= NumberOfAuger(Z,i,id); a++) {
        G4double e = StartShellEnergy(Z,i,id,a)/MeV;
        G4double p = StartShellProb(Z,i,id,a);
        G4int augerId = AugerShellId(Z, i, id, a);
        G4cout << k <<") Shell id: " << id <<G4endl;
        G4cout << "    Auger Originatig Shell Id :"<< augerId <<G4endl;
        G4cout << " - Transition energy = " << e << " MeV "<<G4endl;
        G4cout   << " - Transition probability = " << p <<G4endl;
      }
    }
      G4cout << "-------------------------------------------------" 
         << G4endl;
    }
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
G4AugerTransition* G4AugerData::GetAugerTransition(G4int Z,G4int vacancyShellIndex)
{
  std::vector<G4AugerTransition>* dataSet = &augerTransitionTable[Z];
  std::vector<G4AugerTransition>::iterator vectorIndex = dataSet->begin() + vacancyShellIndex;
  
  G4AugerTransition* augerTransition = &(*vectorIndex);
  return augerTransition;
}
 
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 
std::vector<G4AugerTransition>* G4AugerData::GetAugerTransitions(G4int Z)
{
  std::vector<G4AugerTransition>* dataSet = &augerTransitionTable[Z];
  return dataSet;
}